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1

On the Value of Flexibility in R&D Projects

Santiago, Leonardo P., Vakili, Pirooz

Journal:

Management Science

Year:

2005

Language:

english

File:

PDF, 226 KB

english, 2005

2

Reallocating risks and returns to scale up adoption of distributed electricity resources

Kulatilaka, Nalin, Santiago, Leonardo, Vakili, Pirooz

Journal:

Year:

2014

Language:

english

File:

PDF, 360 KB

english, 2014

3

[IEEE 2010 Winter Simulation Conference - (WSC 2010) - Baltimore, MD, USA (2010.12.5-2010.12.8)] Proceedings of the 2010 Winter Simulation Conference - Control variates for sensitivity estimation

Borogovac, Tarik, Sun, Na, Vakili, Pirooz

Year:

2010

Language:

english

File:

PDF, 340 KB

english, 2010

4

Massively parallel and distributed simulation of a class of discrete event systems: a different perspective

Journal:

ACM Transactions on Modeling and Computer Simulation

Year:

1992

Language:

english

File:

PDF, 1.61 MB

english, 1992

5

On the Value of Flexibility in R&D Projects

Leonardo P. Santiago and Pirooz Vakili

Journal:

Management Science

Year:

2005

Language:

english

File:

PDF, 2.87 MB

english, 2005

6

Designing heterogeneous hierarchical material systems: a holistic approach to structural and materials design

Ryan, Emily, Pollard, Zoe A., Ha, Quang-Thinh, Roshandelpoor, Athar, Vakili, Pirooz, Goldfarb, Jillian L.

Journal:

MRS Communications

Year:

2019

Language:

english

File:

PDF, 715 KB

english, 2019

7

On the efficient generation of discrete event sample paths under different system parameter values

Yu-Chi Ho, Shu Li, Pirooz Vakili

Journal:

Mathematics and Computers in Simulation

Year:

1988

Language:

english

File:

PDF, 1.88 MB

english, 1988

8

Achieving reliability and high accuracy in automated protein docking: Cluspro, PIPER, SDU, and stability analysis in CAPRI rounds 13–19

Dima Kozakov, David R. Hall, Dmitri Beglov, Ryan Brenke, Stephen R. Comeau, Yang Shen, Keyong Li, Jiefu Zheng, Pirooz Vakili, Ioannis Ch. Paschalidis, Sandor Vajda

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 298 KB

english, 2010

9

Uniformization based sensitivity estimation for a class of discrete-event systems

Pirooz Vakili, Guo-Xiang Yu

Journal:

Discrete Event Dynamic Systems

Year:

1994

Language:

english

File:

PDF, 1.13 MB

english, 1994

10

Variance reduction algorithms for parallel replicated simulation of uniformized Markov chains

Simon Streltsov, Pirooz Vakili

Journal:

Discrete Event Dynamic Systems

Year:

1996

Language:

english

File:

PDF, 1.34 MB

english, 1996

11

Using a standard clock technique for efficient simulation

Journal:

Operations Research Letters

Year:

1991

Language:

english

File:

PDF, 565 KB

english, 1991

12

A Non-myopic Utility Function for Statistical Global Optimization Algorithms

Simon Streltsov, Pirooz Vakili

Journal:

Journal of Global Optimization

Year:

1999

Language:

english

File:

PDF, 91 KB

english, 1999

13

Rigid Body Energy Minimization on Manifolds for Molecular Docking

Mirzaei, Hanieh, Beglov, Dmitri, Paschalidis, Ioannis Ch., Vajda, Sandor, Vakili, Pirooz, Kozakov, Dima

Journal:

Journal of Chemical Theory and Computation

Year:

2012

Language:

english

File:

PDF, 3.09 MB

english, 2012

14

[IEEE 2007 46th IEEE Conference on Decision and Control - New Orleans, LA, USA (2007.12.12-2007.12.14)] 2007 46th IEEE Conference on Decision and Control - Optimizing noisy funnel-like functions on the euclidean group with applications to protein docking

Yang Shen,, Pirooz Vakili,, Vajda, Sandor, Paschalidis, Ioannis Ch.

Year:

2007

Language:

english

File:

PDF, 238 KB

english, 2007

15

Efficient Maintenance and Update of Nonbonded Lists in Macromolecular Simulations

Chowdhury, Rezaul, Beglov, Dmitri, Moghadasi, Mohammad, Paschalidis, Ioannis Ch., Vakili, Pirooz, Vajda, Sandor, Bajaj, Chandrajit, Kozakov, Dima

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 2.00 MB

english, 2014

16

[IEEE 2008 Winter Simulation Conference (WSC) - Miami, FL, USA (2008.12.7-2008.12.10)] 2008 Winter Simulation Conference - Monotonicity and stratification

Zhao, Gang, Vakili, Pirooz

Year:

2008

Language:

english

File:

PDF, 225 KB

english, 2008

17

[IEEE 2008 Winter Simulation Conference (WSC) - Miami, FL, USA (2008.12.7-2008.12.10)] 2008 Winter Simulation Conference - Control variate technique: A constructive approach

Borogovac, Tarik, Vakili, Pirooz

Year:

2008

Language:

english

File:

PDF, 390 KB

english, 2008

18

[IEEE 2012 IEEE 51st Annual Conference on Decision and Control (CDC) - Maui, HI, USA (2012.12.10-2012.12.13)] 2012 IEEE 51st IEEE Conference on Decision and Control (CDC) - A message passing approach to Side Chain Positioning with applications in protein docking refinement

Moghadasi, Mohammad, Kozakov, Dima, Mamonov, Artem B., Vakili, Pirooz, Vajda, Sandor, Paschalidis, Ioannis Ch.

Year:

2012

Language:

english

File:

PDF, 419 KB

english, 2012

19

[IEEE 2007 Winter Simulation Conference - Washington, DC, USA (2007.12.9-2007.12.12)] 2007 Winter Simulation Conference - Efficient estimation of option price and price sensitivities via Structured Database Monte Carlo (SDMC)

Gang Zhao,, Tarik Borogovac,, Pirooz Vakili,

Year:

2007

Language:

english

File:

PDF, 309 KB

english, 2007

20

[IEEE 2006 Winter Simulation Conference - Monterey, CA, USA (2006.12.3-2006.12.6)] Proceedings of the 2006 Winter Simulation Conference - A New Efficient Simulation Strategy for Pricing Path-Dependent Options

Zhao, Gang, Zhou, Yakun, Vakili, Pirooz

Year:

2006

Language:

english

File:

PDF, 872 KB

english, 2006

21

SDU: A Semidefinite Programming-Based Underestimation Method for Stochastic Global Optimization in Protein Docking

Paschalidis, Ioannis Ch., Shen, Yang, Vakili, Pirooz, Vajda, Sandor

Journal:

IEEE Transactions on Automatic Control

Year:

2007

Language:

english

File:

PDF, 1.17 MB

english, 2007

22

[IEEE 2013 IEEE 52nd Annual Conference on Decision and Control (CDC) - Firenze (2013.12.10-2013.12.13)] 52nd IEEE Conference on Decision and Control - Flexible refinement of protein-ligand docking on manifolds

Mirzaei, Hanieh, Villar, Elizabeth, Mottarella, Scott, Beglov, Dmitri, Paschalidis, Ioannis C., Vajda, Sandor, Kozakov, Dima, Vakili, Pirooz

Year:

2013

Language:

english

File:

PDF, 384 KB

english, 2013

23

[IEEE 2012 IEEE 51st Annual Conference on Decision and Control (CDC) - Maui, HI, USA (2012.12.10-2012.12.13)] 2012 IEEE 51st IEEE Conference on Decision and Control (CDC) - A new approach to rigid body minimization with application to molecular docking

Mirzaei, Hanieh, Kozakov, Dima, Beglov, Dmitri, Paschalidis, Ioannis Ch., Vajda, Sandor, Vakili, Pirooz

Year:

2012

Language:

english

File:

PDF, 345 KB

english, 2012

24

[IEEE 2010 Winter Simulation Conference - (WSC 2010) - Baltimore, MD, USA (2010.12.5-2010.12.8)] Proceedings of the 2010 Winter Simulation Conference - Importance sampling for parametric estimation

Tang, Xiaojin, Vakili, Pirooz

Year:

2010

Language:

english

File:

PDF, 434 KB

english, 2010

25

[IEEE 2013 IEEE 52nd Annual Conference on Decision and Control (CDC) - Firenze (2013.12.10-2013.12.13)] 52nd IEEE Conference on Decision and Control - A new distributed algorithm for side-chain positioning in the process of protein docking

Moghadasi, Mohammad, Kozakov, Dima, Vakili, Pirooz, Vajda, Sandor, Paschalidis, Ioannis C.

Year:

2013

Language:

english

File:

PDF, 335 KB

english, 2013

26

Energy Minimization on Manifolds for Docking Flexible Molecules

Mirzaei, Hanieh, Zarbafian, Shahrooz, Villar, Elizabeth, Mottarella, Scott, Beglov, Dmitri, Vajda, Sandor, Paschalidis, Ioannis Ch., Vakili, Pirooz, Kozakov, Dima

Journal:

Journal of Chemical Theory and Computation

Year:

2015

Language:

english

File:

PDF, 672 KB

english, 2015

27

[IEEE 2014 IEEE 53rd Annual Conference on Decision and Control (CDC) - Los Angeles, CA, USA (2014.12.15-2014.12.17)] 53rd IEEE Conference on Decision and Control - Optimization on the space of rigid and flexible motions: An alternative manifold optimization approach

Vakili, Pirooz, Mirzaei, Hanieh, Zarbafian, Shahrooz, Paschalidis, Ioannis Ch., Kozakov, Dima, Vajda, Sandor

Year:

2014

Language:

english

File:

PDF, 473 KB

english, 2014

28

The Impact of Side-Chain Packing on Protein Docking Refinement

Moghadasi, Mohammad, Mirzaei, Hanieh, Mamonov, Artem, Vakili, Pirooz, Vajda, Sandor, Paschalidis, Ioannis Ch., Kozakov, Dima

Journal:

Journal of Chemical Information and Modeling

Year:

2015

Language:

english

File:

PDF, 2.12 MB

english, 2015

29

Comparing Markov Chains Simulated in Parallel

Glasserman, Paul, Vakili, Pirooz

Journal:

Probability in the Engineering and Informational Sciences

Year:

1994

Language:

english

File:

PDF, 1.01 MB

english, 1994

30

[ACM Press the 24th conference - Arlington, Virginia, United States (1992.12.13-1992.12.16)] Proceedings of the 24th conference on Winter simulation - WSC '92 - Correlation of Markov chains simulated in parallel

Glasserman, Paul, Vakili, Pirooz

Year:

1992

Language:

english

File:

PDF, 692 KB

english, 1992

31

[ACM Press the 25th conference - Los Angeles, California, United States (1993.12.12-1993.12.15)] Proceedings of the 25th conference on Winter simulation - WSC '93 - Parallel replicated simulation of Markov chains

Streltsov, Simon, Vakili, Pirooz

Year:

1993

Language:

english

File:

PDF, 546 KB

english, 1993

32

[ACM Press the 27th conference - Arlington, Virginia, United States (1995.12.03-1995.12.06)] Proceedings of the 27th conference on Winter simulation - WSC '95 - Variance reduction for discrete event systems driven by Poisson processes

Year:

1995

Language:

english

File:

PDF, 643 KB

english, 1995

33

46 Encounter complexes and dimensionality reduction in protein-protein association

Kozakov, Dima, Vakili, Pirooz, Paschalidis, Ioannis Ch., Vajda, Sandor

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 491 KB

english, 2015

34

[IEEE 2014 IEEE 53rd Annual Conference on Decision and Control (CDC) - Los Angeles, CA, USA (2014.12.15-2014.12.17)] 53rd IEEE Conference on Decision and Control - A Subspace Semi-Definite programming-based Underestimation (SSDU) method for stochastic global optimization in protein docking

Nan, Feng, Moghadasi, Mohammad, Vakili, Pirooz, Vajda, Sandor, Kozakov, Dima, Paschalidis, Ioannis Ch.

Year:

2014

Language:

english

File:

PDF, 480 KB

english, 2014

35

[IEEE Conference Proceedings. Annual International Conference of the IEEE Engineering in Medicine and Biology Society - New York, NY (2006.08.30-2006.09.3)] 2006 International Conference of the IEEE Engineering in Medicine and Biology Society - Protein-protein docking with reduced potentials by exploiting multi-dimensional energy funnels

Paschalidis, Ioannis Ch., Shen, Yang, Vakili, Pirooz, Vajda, Sandor

Year:

2006

Language:

english

File:

PDF, 358 KB

english, 2006

36

[IEEE 2006 International Conference of the IEEE Engineering in Medicine and Biology Society - New York, NY, USA (2006.08.30-2006.09.3)] 2006 International Conference of the IEEE Engineering in Medicine and Biology Society - Protein-protein docking with reduced potentials by exploiting multi-dimensional energy funnels

Paschalidis, Ioannis Ch., Shen, Yang, Vakili, Pirooz, Vajda, Sandor

Year:

2006

Language:

english

File:

PDF, 358 KB

english, 2006

37

SPIE Proceedings [SPIE AeroSense '97 - Orlando, FL (Monday 21 April 1997)] Enabling Technology for Simulation Science - Parallel/distributed simulation via event-reservation approach for parametric study of discrete event systems

Bhatti, Ghulam M., Vakili, Pirooz, Sisti, Alex F.

Year:

1997

Language:

english

File:

PDF, 585 KB

english, 1997

38

Focused grid-based resampling for protein docking and mapping

Mamonov, Artem B., Moghadasi, Mohammad, Mirzaei, Hanieh, Zarbafian, Shahrooz, Grove, Laurie E., Bohnuud, Tanggis, Vakili, Pirooz, Ch. Paschalidis, Ioannis, Vajda, Sandor, Kozakov, Dima

Journal:

Journal of Computational Chemistry

Year:

2016

Language:

english

File:

PDF, 674 KB

english, 2016

39

Revenue maximisation in networks with capacity constraints

Hu, J.Q., Vakili, Pirooz, Zhao, Chenming

Journal:

International Journal of Revenue Management

Year:

2009

Language:

english

File:

PDF, 457 KB

english, 2009

40

Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes

Shen, Yang, Paschalidis, Ioannis Ch., Vakili, Pirooz, Vajda, Sandor, Jacobson, Matthew P.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 1.55 MB

english, 2008